.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        Click :ref:`here <sphx_glr_download_auto_benchmarks_1d-benchmark.py>`     to download the full example code
    .. rst-class:: sphx-glr-example-title

    .. _sphx_glr_auto_benchmarks_1d-benchmark.py:


==================================
1D ndsplines vs. scipy.interpolate
==================================



.. image:: /auto_benchmarks/images/sphx_glr_1d-benchmark_001.png
    :alt: make_interp_spline, spline.__call__
    :class: sphx-glr-single-img






.. code-block:: default
   :lineno-start: 7


    import numpy as np
    import gc
    import time

    from scipy import interpolate
    import ndsplines

    import matplotlib.pyplot as plt

    # number of time measurements per input/query size
    n_iter = 10


    def timeit(func, n_iter=1, return_samps=True, **func_kwargs):
        results = np.empty(n_iter, dtype=np.double)
        for i in range(n_iter):
            # gc.collect()

            tstart = time.time()
            func(**func_kwargs)
            delta = time.time() - tstart

            results[i] = delta

        if return_samps:
            return results
        else:
            return np.mean(results)


    def gen_xy(size):
        x = np.pi * np.linspace(-1, 1, size)
        y = np.sin(x)
        return x, y


    def gen_xx(size):
        return 3 * np.pi * np.linspace(-1, 1, size)


    # make_interp_spline timing
    x_sizes = np.logspace(1, 3, 10, dtype=int)
    t_scipy_build = np.empty((2, x_sizes.size))
    t_ndspl_build = np.empty((2, x_sizes.size))
    for i, size in enumerate(x_sizes):
        x, y = gen_xy(size)
        t_scipy = 10e3 * timeit(interpolate.make_interp_spline, x=x.copy(), y=y,
                                n_iter=n_iter)
        t_ndspl = 10e3 * timeit(ndsplines.make_interp_spline, x=x.copy(), y=y,
                                n_iter=n_iter)
        t_scipy_build[:, i] = np.mean(t_scipy), np.std(t_scipy)
        t_ndspl_build[:, i] = np.mean(t_ndspl), np.std(t_ndspl)

    # spline query timing
    x, y = gen_xy(7)
    xx_sizes = np.logspace(0, 3, 10, dtype=int)
    t_scipy_call = np.empty((2, xx_sizes.size))
    t_ndspl_npy_call = np.empty((2, xx_sizes.size))
    t_ndspl_pyx_call = np.empty((2, xx_sizes.size))
    for i, size in enumerate(xx_sizes):
        xx = gen_xx(size)
        spl_scipy = interpolate.make_interp_spline(x.copy(), y)
        spl_ndspl = ndsplines.make_interp_spline(x.copy(), y)
        spl_ndspl.allocate_workspace_arrays(size)
        t_scipy = 10e3 * timeit(spl_scipy, x=xx.copy(), n_iter=n_iter)
        ndsplines.set_impl('cython')
        t_ndspl_pyx = 10e3 * timeit(spl_ndspl, x=xx.copy(), n_iter=n_iter)
        ndsplines.set_impl('numpy')
        t_ndspl_npy = 10e3 * timeit(spl_ndspl, x=xx.copy(), n_iter=n_iter)
        t_scipy_call[:, i] = np.mean(t_scipy), np.std(t_scipy)
        t_ndspl_npy_call[:, i] = np.mean(t_ndspl_npy), np.std(t_ndspl_npy)
        t_ndspl_pyx_call[:, i] = np.mean(t_ndspl_pyx), np.std(t_ndspl_pyx)

    # plot results
    fig, axes = plt.subplots(nrows=2)

    axes[0].errorbar(x_sizes, t_scipy_build[0], capsize=3, yerr=t_scipy_build[1],
                     label='scipy')
    axes[0].errorbar(x_sizes, t_ndspl_build[0], capsize=3, yerr=t_ndspl_build[1],
                     label='ndsplines')
    axes[0].set_title('make_interp_spline')

    axes[1].errorbar(xx_sizes, t_scipy_call[0], capsize=3, yerr=t_scipy_call[1],
                     label='scipy.interpolate')
    axes[1].errorbar(xx_sizes, t_ndspl_npy_call[0], capsize=3, yerr=t_ndspl_npy_call[1],
                     label='ndsplines npy')
    axes[1].errorbar(xx_sizes, t_ndspl_pyx_call[0], capsize=3, yerr=t_ndspl_pyx_call[1],
                     label='ndsplines pyx')
    axes[1].set_title('spline.__call__')

    for ax in axes:
        ax.set_xlabel('input array size')
        ax.set_ylabel('time [ms]')
        ax.set_xscale('log')
        ax.grid()

    axes[-1].legend()
    fig.tight_layout()

    plt.show()


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** ( 0 minutes  0.637 seconds)


.. _sphx_glr_download_auto_benchmarks_1d-benchmark.py:


.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-example



  .. container:: sphx-glr-download sphx-glr-download-python

     :download:`Download Python source code: 1d-benchmark.py <1d-benchmark.py>`



  .. container:: sphx-glr-download sphx-glr-download-jupyter

     :download:`Download Jupyter notebook: 1d-benchmark.ipynb <1d-benchmark.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_